Sample Set Annotation Tool: Main Listing

Sample Set	Species	Disease	Sample Source	Sample Count
Expression data from HIV exposed and uninfected women - GSE33580	Homo sapiens	HIV	Whole Blood	86
Genome-wide analysis of gene expression in whole blood from HIV-1 progressors and non-progressors - GSE56837	Homo sapiens	HIV	Whole Blood	26
Gene-expression profiling of HIV-1 infection and perinatal transmission in Botswana - GSE4124	Homo sapiens	HIV	PBMC	45
Gene expression before HAART initiation predicts HIV-infected individuals at risk of poor CD4+ T cell recovery - GSE19087	Homo sapiens	HIV	PBMC	24
Differential Gene Expression of Soluble CD8+ T-cell mediated suppression of HIV replication in three older children - GSE23183	Homo sapiens	HIV	PBMC	3
Differential Gene Expression in HIV-Infected Individuals Following ART - GSE44228	Homo sapiens	HIV	PBMC	72
Chronic CD4+ T cell Activation & Depletion in HIV-1 Infection: Type I Interferon-Mediated Disruption of T Cell Dynamic - GSE9927	Homo sapiens	HIV	CD4 T cells	20
Comparison of CD4+ T cell function between HIV-1 resistant and HIV-1 susceptible individuals (Affymetrix) - GSE14278	Homo sapiens	HIV	CD4 T cells	18
Genome wide mRNA expression correlates of viral control in CD4+T cells from HIV-1 infected individuals - GSE18233	Homo sapiens	HIV	CD4 T cells	202
CD4+ T cell gene expression in virologically suppressed HIV-infected patients during Maraviroc intensification therapy - GSE56804	Homo sapiens	HIV	CD4 T cells	77
Transcriptional profiling of CD4 T-cells in HIV-1 infected patients - GSE23879	Homo sapiens	HIV	PBMC, CD4 T cells	40
Comparison of transcriptional profiles of CD4+ and CD8+ T cells from HIV-infected pateints and uninfected control group - GSE6740	Homo sapiens	HIV	CD4 T cells, CD8 T cells	40
Comparative analysis of genomic features of human HIV-1 infection and primate models of SIV infection - GSE28128	Homo sapiens	HIV	CD4 T cells, CD8 T cells	79
Comparison of gene expression profiles of HIV-specific CD8 T cells from controllers and progressors - GSE24081	Homo sapiens	HIV	CD8 T cells	42
Longitudinal comparison of monocytes from an HIV viremic vs avirmeic state - GSE5220	Homo sapiens	HIV	Monocytes	16
Transcriptome analysis of primary monocytes from HIV+ patients with differential responses to therapy - GSE52900	Homo sapiens	HIV	Monocytes	14
Transcriptome analysis of HIV-infected peripheral blood monocytes - GSE50011	Homo sapiens	HIV, Neurological disorde ...	Monocytes	86
Expression data from CD11c+ mDCs in HIV infection - GSE42058	Homo sapiens	HIV	Myeloid Dendritic Cells	8
Microarray Analysis of Lymphatic Tissue Reveals Stage-Specific, Gene-Expression Signatures in HIV-1 Infection - GSE16363	Homo sapiens	HIV	Lymph node biopsy	52
The Relationship between Virus Replication and Host Gene Expression in Lymphatic Tissue during HIV-1 Infection - GSE21589	Homo sapiens	HIV	Inguinal lymph node	42
Expression data from HAART interruption in HIV patients - GSE28177	Homo sapiens	HIV	GALT	6
The National NeuroAIDS Tissue Consortium Brain Gene Array: Two types of HIV-associated neurocognitive impairment - GSE35864	Homo sapiens	HIV, Neurological disorde ...	Brain	72
Genome wide transcriptional profiling of HIV positive and negative children with active tuberculosis, latent TB infection and other diseases - GSE39941	Homo sapiens	HIV, Tuberculosis	Whole Blood	491
Gene expression analysis of PBMC from HIV and HIV/TB co-infected patients - GSE50834	Homo sapiens	HIV, Tuberculosis	PBMC	44
Comparative analysis of genomic features of human HIV-1 infection and primate models of SIV infection - GSE28128 - CD4 T subset	Homo sapiens	HIV	CD4 T cells	41
Comparative analysis of genomic features of human HIV-1 infection and primate models of SIV infection - GSE28128 - CD8 T subset	Homo sapiens	HIV	CD8 T cells	38
HIV-1 infection in human PBMCs in vivo - GSE2171	Homo sapiens	HIV	PBMC	87
CD4+ T Cell Decline is Predicted by Differential Expression of Genes in HIV seropositive patients - GSE10924	Homo sapiens	HIV	PBMC	96
Whole Blood Transcriptional Response to Early Acute HIV - GSE29429-GPL10558	Homo sapiens	HIV	Whole Blood	47
Whole Blood Transcriptional Response to Early Acute HIV - GSE29429-GPL6947	Homo sapiens	HIV	Whole Blood	185
Blood Transcriptional Signature of hyperinflammation in HIV-associated Tuberculosis - GSE58411	Homo sapiens	HIV, Tuberculosis, IRIS	Whole Blood	107
Inflammation and macrophage activation in adipose tissue of HIV-infected patients under antiretroviral treatment - GSE19811	Homo sapiens	HIV	Adipose tissue	13
Fatigue-related HIV disease gene-networks identified in CD14+ cells isolated from HIV-infected patients - GSE18468	Homo sapiens	HIV, Neurological disorde ...	Monocytes	15
Gene Expression in Frontal Cortex in Major Depression and HIV - GSE17440	Homo sapiens	HIV, Neurological disorde ...	Brain	8
Molecular Classification of AIDS-Related Lymphomas - GSE17189	Homo sapiens	HIV, Lymphoma	Colon, Lung, Neck ...	17
Genome-wide transcriptional profiling of HIV positive and negative adults with active tuberculosis, latent TB infection and other diseases - GSE37250_family	Homo sapiens	HIV, Tuberculosis	Whole Blood	537
GSE58411_series_matrix				107
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