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Clinical

Gene Expression in Frontal Cortex in Major Depression and HIV - GSE17440

Purpose

Major depressive disorder (MDD) is a clinically defined entity with little understanding as to the underlying pathological substrate. Biologically, MDD is characterized by disruption of neurotransmitters, especially serotonin and noradrenaline, which are the main targets of antidepressants. We previously demonstrated significant reduction of glial cell number in the cingulate and dorsolateral prefrontal cortical regions. Unfortunately, individuals living with HIV still have very high rates of MDD, despite the fact that mortality rates have fallen sharply with effective antiretroviral treatment. It is possible that in this treatment era, living with chronic HIV infection may result in long-term neuropathological changes that predispose to MDD. For example, it is known that HIV is associated with a range of inflammatory pathologies, neuronal loss, and dendrite-synaptic damage. In HIV, these neurodegenerative changes have been linked to neurocognitive impairments, however it is also possible that these changes potentiate MDD.

In the current study, we sought to determine whether there are changes in gene expression in the MDD brain in the frontal cortex in HIV-context. We identify a large number of genes dysregulated at p<0.05 significance.

Hypothesis

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Experimental Design

Retrospective gene expression analysis of autopsy brain tissue. Four HIV/MDD subjects are identified and age-matched HIV patients without neuropsychiatric conditions are compared as controls.

Experimental Variables

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Controls

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Methods

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Additional Information

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Microarray
Affymetrix HG-U133_Plus_2
8 Samples Loaded: 8
Human (Homo sapiens)
Brain
HIV, Neurological disorders
Sample Set Spreadsheet
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Samples Preview
Sample ID Age Gender !Sample_title hiv status tissue
GSM435065 43 Male FrontalC_HIVMDD_1 HIV+ Brain, frontal cortex
GSM435066 38 Male FrontalC_HIVMDD_2 HIV+ Brain, frontal cortex
GSM435067 50 Male FrontalC_HIV_4 HIV+ Brain, frontal cortex
GSM435068 34 Male FrontalC_HIVMDD_4 HIV+ Brain, frontal cortex
GSM435069 54 Male FrontalC_HIV_1 HIV+ Brain, frontal cortex
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Raw Signal
Raw Signal
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Sample ID Age Gender !Sample Title Hiv status Tissue Pmi Latest mdd visit
GSM435065
43
Male
FrontalC_HIVMDD_1
HIV+
Brain, frontal cortex
12
6 mo
GSM435066
38
Male
FrontalC_HIVMDD_2
HIV+
Brain, frontal cortex
12
12 mo
GSM435067
50
Male
FrontalC_HIV_4
HIV+
Brain, frontal cortex
12
NO
GSM435068
34
Male
FrontalC_HIVMDD_4
HIV+
Brain, frontal cortex
4
6 mo
GSM435069
54
Male
FrontalC_HIV_1
HIV+
Brain, frontal cortex
12
NO
GSM435070
56
Male
FrontalC_HIV_2
HIV+
Brain, frontal cortex
12
NO
GSM435071
50
Male
FrontalC_HIV_3
HIV+
Brain, frontal cortex
15
NO
GSM435072
56
Male
FrontalC_HIVMDD_3
HIV+
Brain, frontal cortex
12
12

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