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Clinical

CD4+ T cell gene expression in virologically suppressed HIV-infected patients during Maraviroc intensification therapy - GSE56804

Purpose

Analysis of CD4+ T cell gene expression changes after 4 and 24 weeks of Maraviroc administration relative to baseline in 25 immunodiscordant patients with viral suppression.

Maraviroc elicited very modest changes in CD4+ T cell transcriptome.

Hypothesis

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Experimental Design

The goal of this study was to identify genes with a potential role in Maraviroc-induced CD4+ T cell recovery in immunodiscordant patients. The study measured gene expression in CD4+ T cells isolated from the whole blood of HIV-infected patients before and at two time points after addition of Maraviroc to the baseline antiretroviral therapy. Thirty two patients were recruited from 3 sites, University of California, San Diego (UCSD), University of California, Los Angeles (UCLA) and University of Southern California (USC), and peripheral blood samples were obtained at 3 visits, week 0 (baseline), week 4 and week 24 after initiation of Maraviroc therapy. Because of poor RNA quality and outliers on the microarrays, 7 patients were excluded from the study. Non-outlier week 0 and week 24 arrays from one of the patients (Patient ID 01-005) were used for array data normalization and processing, but were not included in the time course analysis since the week 4 sample was not available.

Experimental Variables

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Controls

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Methods

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Additional Information

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Microarray
Illumina HumanHT-12 v4
77 Samples Loaded: 77
Human (Homo sapiens)
CD4 T cells
HIV
Sample Set Spreadsheet
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Samples Preview
Sample ID !Sample_title cell type treatment patient id time point
GSM1369534 UCSD_pt1_week0 primary CD4+ T cells baseline 01-001 week 0
GSM1369535 UCSD_pt1_week4 primary CD4+ T cells Maraviroc 01-001 week 4
GSM1369536 UCSD_pt1_week24 primary CD4+ T cells Maraviroc 01-001 week 24
GSM1369537 UCSD_pt2_week0 primary CD4+ T cells baseline 01-002 week 0
GSM1369538 UCSD_pt2_week4 primary CD4+ T cells Maraviroc 01-002 week 4
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Log2 Transformed
Raw Signal
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Sample ID !Sample Title Cell type Treatment Patient id Time point Infection Recruitment site
GSM1369534
UCSD_pt1_week0
primary CD4+ T cells
baseline
01-001
week 0
HIV
UCSD
GSM1369535
UCSD_pt1_week4
primary CD4+ T cells
Maraviroc
01-001
week 4
HIV
UCSD
GSM1369536
UCSD_pt1_week24
primary CD4+ T cells
Maraviroc
01-001
week 24
HIV
UCSD
GSM1369537
UCSD_pt2_week0
primary CD4+ T cells
baseline
01-002
week 0
HIV
UCSD
GSM1369538
UCSD_pt2_week4
primary CD4+ T cells
Maraviroc
01-002
week 4
HIV
UCSD
GSM1369539
UCSD_pt2_week24
primary CD4+ T cells
Maraviroc
01-002
week 24
HIV
UCSD
GSM1369540
UCSD_pt5_week0
primary CD4+ T cells
baseline
01-005
week 0
HIV
UCSD
GSM1369541
UCSD_pt5_week24
primary CD4+ T cells
Maraviroc
01-005
week 24
HIV
UCSD
GSM1369542
UCSD_pt6_week0
primary CD4+ T cells
baseline
01-006
week 0
HIV
UCSD
GSM1369543
UCSD_pt6_week4
primary CD4+ T cells
Maraviroc
01-006
week 4
HIV
UCSD
GSM1369544
UCSD_pt6_week24
primary CD4+ T cells
Maraviroc
01-006
week 24
HIV
UCSD
GSM1369545
UCSD_pt8_week0
primary CD4+ T cells
baseline
01-008
week 0
HIV
UCSD
GSM1369546
UCSD_pt8_week4
primary CD4+ T cells
Maraviroc
01-008
week 4
HIV
UCSD
GSM1369547
UCSD_pt8_week24
primary CD4+ T cells
Maraviroc
01-008
week 24
HIV
UCSD
GSM1369548
UCSD_pt9_week0
primary CD4+ T cells
baseline
01-009
week 0
HIV
UCSD
GSM1369549
UCSD_pt9_week4
primary CD4+ T cells
Maraviroc
01-009
week 4
HIV
UCSD
GSM1369550
UCSD_pt9_week24
primary CD4+ T cells
Maraviroc
01-009
week 24
HIV
UCSD
GSM1369551
UCSD_pt10_week0
primary CD4+ T cells
baseline
01-010
week 0
HIV
UCSD
GSM1369552
UCSD_pt10_week4
primary CD4+ T cells
Maraviroc
01-010
week 4
HIV
UCSD
GSM1369553
UCSD_pt10_week24
primary CD4+ T cells
Maraviroc
01-010
week 24
HIV
UCSD
GSM1369554
UCSD_pt11_week0
primary CD4+ T cells
baseline
01-011
week 0
HIV
UCSD
GSM1369555
UCSD_pt11_week4
primary CD4+ T cells
Maraviroc
01-011
week 4
HIV
UCSD
GSM1369556
UCSD_pt11_week24
primary CD4+ T cells
Maraviroc
01-011
week 24
HIV
UCSD
GSM1369557
UCLA_pt2_week0
primary CD4+ T cells
baseline
21-802
week 0
HIV
UCLA
GSM1369558
UCLA_pt2_week4
primary CD4+ T cells
Maraviroc
21-802
week 4
HIV
UCLA
GSM1369559
UCLA_pt2_week24
primary CD4+ T cells
Maraviroc
21-802
week 24
HIV
UCLA
GSM1369560
UCLA_pt3_week0
primary CD4+ T cells
baseline
21-803
week 0
HIV
UCLA
GSM1369561
UCLA_pt3_week4
primary CD4+ T cells
Maraviroc
21-803
week 4
HIV
UCLA
GSM1369562
UCLA_pt3_week24
primary CD4+ T cells
Maraviroc
21-803
week 24
HIV
UCLA
GSM1369563
UCLA_pt4_week0
primary CD4+ T cells
baseline
21-804
week 0
HIV
UCLA
GSM1369564
UCLA_pt4_week4
primary CD4+ T cells
Maraviroc
21-804
week 4
HIV
UCLA
GSM1369565
UCLA_pt4_week24
primary CD4+ T cells
Maraviroc
21-804
week 24
HIV
UCLA
GSM1369566
UCLA_pt5_week0
primary CD4+ T cells
baseline
21-805
week 0
HIV
UCLA
GSM1369567
UCLA_pt5_week4
primary CD4+ T cells
Maraviroc
21-805
week 4
HIV
UCLA
GSM1369568
UCLA_pt5_week24
primary CD4+ T cells
Maraviroc
21-805
week 24
HIV
UCLA
GSM1369569
UCLA_pt6_week0
primary CD4+ T cells
baseline
21-806
week 0
HIV
UCLA
GSM1369570
UCLA_pt6_week4
primary CD4+ T cells
Maraviroc
21-806
week 4
HIV
UCLA
GSM1369571
UCLA_pt6_week24
primary CD4+ T cells
Maraviroc
21-806
week 24
HIV
UCLA
GSM1369572
UCLA_pt8_week0
primary CD4+ T cells
baseline
21-808
week 0
HIV
UCLA
GSM1369573
UCLA_pt8_week4
primary CD4+ T cells
Maraviroc
21-808
week 4
HIV
UCLA
GSM1369574
UCLA_pt8_week24
primary CD4+ T cells
Maraviroc
21-808
week 24
HIV
UCLA
GSM1369575
UCLA_pt9_week0
primary CD4+ T cells
baseline
21-809
week 0
HIV
UCLA
GSM1369576
UCLA_pt9_week4
primary CD4+ T cells
Maraviroc
21-809
week 4
HIV
UCLA
GSM1369577
UCLA_pt9_week24
primary CD4+ T cells
Maraviroc
21-809
week 24
HIV
UCLA
GSM1369578
UCLA_pt10_week0
primary CD4+ T cells
baseline
21-810
week 0
HIV
UCLA
GSM1369579
UCLA_pt10_week4
primary CD4+ T cells
Maraviroc
21-810
week 4
HIV
UCLA
GSM1369580
UCLA_pt10_week24
primary CD4+ T cells
Maraviroc
21-810
week 24
HIV
UCLA
GSM1369581
UCLA_pt12_week0
primary CD4+ T cells
baseline
21-812
week 0
HIV
UCLA
GSM1369582
UCLA_pt12_week4
primary CD4+ T cells
Maraviroc
21-812
week 4
HIV
UCLA
GSM1369583
UCLA_pt12_week24
primary CD4+ T cells
Maraviroc
21-812
week 24
HIV
UCLA
GSM1369584
UCLA_pt13_week0
primary CD4+ T cells
baseline
21-813
week 0
HIV
UCLA
GSM1369585
UCLA_pt13_week4
primary CD4+ T cells
Maraviroc
21-813
week 4
HIV
UCLA
GSM1369586
UCLA_pt13_week24
primary CD4+ T cells
Maraviroc
21-813
week 24
HIV
UCLA
GSM1369587
UCLA_pt15_week0
primary CD4+ T cells
baseline
21-815
week 0
HIV
UCLA
GSM1369588
UCLA_pt15-week4
primary CD4+ T cells
Maraviroc
21-815
week 4
HIV
UCLA
GSM1369589
UCLA_pt15_week24
primary CD4+ T cells
Maraviroc
21-815
week 24
HIV
UCLA
GSM1369590
USC_pt1_week0
primary CD4+ T cells
baseline
03-401
week 0
HIV
USC
GSM1369591
USC_pt1_week4
primary CD4+ T cells
Maraviroc
03-401
week 4
HIV
USC
GSM1369592
USC_pt1_week24
primary CD4+ T cells
Maraviroc
03-401
week 24
HIV
USC
GSM1369593
USC_pt3_week0
primary CD4+ T cells
baseline
03-403
week 0
HIV
USC
GSM1369594
USC_pt3_week4
primary CD4+ T cells
Maraviroc
03-403
week 4
HIV
USC
GSM1369595
USC_pt3_week24
primary CD4+ T cells
Maraviroc
03-403
week 24
HIV
USC
GSM1369596
USC_pt4_week0
primary CD4+ T cells
baseline
03-404
week 0
HIV
USC
GSM1369597
USC_pt4_week4
primary CD4+ T cells
Maraviroc
03-404
week 4
HIV
USC
GSM1369598
USC_pt4_week24
primary CD4+ T cells
Maraviroc
03-404
week 24
HIV
USC
GSM1369599
USC_pt5_week0
primary CD4+ T cells
baseline
03-405
week 0
HIV
USC
GSM1369600
USC_pt5_week4
primary CD4+ T cells
Maraviroc
03-405
week 4
HIV
USC
GSM1369601
USC_pt5_week24
primary CD4+ T cells
Maraviroc
03-405
week 24
HIV
USC
GSM1369602
USC_pt7_week0
primary CD4+ T cells
baseline
03-407
week 0
HIV
USC
GSM1369603
USC_pt7_week4
primary CD4+ T cells
Maraviroc
03-407
week 4
HIV
USC
GSM1369604
USC_pt7_week24
primary CD4+ T cells
Maraviroc
03-407
week 24
HIV
USC
GSM1369605
USC_pt8_week0
primary CD4+ T cells
baseline
03-408
week 0
HIV
USC
GSM1369606
USC_pt8_week4
primary CD4+ T cells
Maraviroc
03-408
week 4
HIV
USC
GSM1369607
USC_pt8_week24
primary CD4+ T cells
Maraviroc
03-408
week 24
HIV
USC
GSM1369608
USC_pt9_week0
primary CD4+ T cells
baseline
03-409
week 0
HIV
USC
GSM1369609
USC_pt9_week4
primary CD4+ T cells
Maraviroc
03-409
week 4
HIV
USC
GSM1369610
USC_pt9_week24
primary CD4+ T cells
Maraviroc
03-409
week 24
HIV
USC

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