CD4+ T cell gene expression in virologically suppressed HIV-infected patients during Maraviroc intensification therapy - GSE56804
Analysis of CD4+ T cell gene expression changes after 4 and 24 weeks of Maraviroc administration relative to baseline in 25 immunodiscordant patients with viral suppression.
Maraviroc elicited very modest changes in CD4+ T cell transcriptome.
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The goal of this study was to identify genes with a potential role in Maraviroc-induced CD4+ T cell recovery in immunodiscordant patients. The study measured gene expression in CD4+ T cells isolated from the whole blood of HIV-infected patients before and at two time points after addition of Maraviroc to the baseline antiretroviral therapy. Thirty two patients were recruited from 3 sites, University of California, San Diego (UCSD), University of California, Los Angeles (UCLA) and University of Southern California (USC), and peripheral blood samples were obtained at 3 visits, week 0 (baseline), week 4 and week 24 after initiation of Maraviroc therapy. Because of poor RNA quality and outliers on the microarrays, 7 patients were excluded from the study. Non-outlier week 0 and week 24 arrays from one of the patients (Patient ID 01-005) were used for array data normalization and processing, but were not included in the time course analysis since the week 4 sample was not available.
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Sample ID | !Sample_title | cell type | treatment | patient id | time point |
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GSM1369534 | UCSD_pt1_week0 | primary CD4+ T cells | baseline | 01-001 | week 0 |
GSM1369535 | UCSD_pt1_week4 | primary CD4+ T cells | Maraviroc | 01-001 | week 4 |
GSM1369536 | UCSD_pt1_week24 | primary CD4+ T cells | Maraviroc | 01-001 | week 24 |
GSM1369537 | UCSD_pt2_week0 | primary CD4+ T cells | baseline | 01-002 | week 0 |
GSM1369538 | UCSD_pt2_week4 | primary CD4+ T cells | Maraviroc | 01-002 | week 4 |
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Sample ID | !Sample Title | Cell type | Treatment | Patient id | Time point | Infection | Recruitment site |
---|---|---|---|---|---|---|---|
GSM1369534 | UCSD_pt1_week0 |
primary CD4+ T cells |
baseline |
01-001 |
week 0 |
HIV |
UCSD |
GSM1369535 | UCSD_pt1_week4 |
primary CD4+ T cells |
Maraviroc |
01-001 |
week 4 |
HIV |
UCSD |
GSM1369536 | UCSD_pt1_week24 |
primary CD4+ T cells |
Maraviroc |
01-001 |
week 24 |
HIV |
UCSD |
GSM1369537 | UCSD_pt2_week0 |
primary CD4+ T cells |
baseline |
01-002 |
week 0 |
HIV |
UCSD |
GSM1369538 | UCSD_pt2_week4 |
primary CD4+ T cells |
Maraviroc |
01-002 |
week 4 |
HIV |
UCSD |
GSM1369539 | UCSD_pt2_week24 |
primary CD4+ T cells |
Maraviroc |
01-002 |
week 24 |
HIV |
UCSD |
GSM1369540 | UCSD_pt5_week0 |
primary CD4+ T cells |
baseline |
01-005 |
week 0 |
HIV |
UCSD |
GSM1369541 | UCSD_pt5_week24 |
primary CD4+ T cells |
Maraviroc |
01-005 |
week 24 |
HIV |
UCSD |
GSM1369542 | UCSD_pt6_week0 |
primary CD4+ T cells |
baseline |
01-006 |
week 0 |
HIV |
UCSD |
GSM1369543 | UCSD_pt6_week4 |
primary CD4+ T cells |
Maraviroc |
01-006 |
week 4 |
HIV |
UCSD |
GSM1369544 | UCSD_pt6_week24 |
primary CD4+ T cells |
Maraviroc |
01-006 |
week 24 |
HIV |
UCSD |
GSM1369545 | UCSD_pt8_week0 |
primary CD4+ T cells |
baseline |
01-008 |
week 0 |
HIV |
UCSD |
GSM1369546 | UCSD_pt8_week4 |
primary CD4+ T cells |
Maraviroc |
01-008 |
week 4 |
HIV |
UCSD |
GSM1369547 | UCSD_pt8_week24 |
primary CD4+ T cells |
Maraviroc |
01-008 |
week 24 |
HIV |
UCSD |
GSM1369548 | UCSD_pt9_week0 |
primary CD4+ T cells |
baseline |
01-009 |
week 0 |
HIV |
UCSD |
GSM1369549 | UCSD_pt9_week4 |
primary CD4+ T cells |
Maraviroc |
01-009 |
week 4 |
HIV |
UCSD |
GSM1369550 | UCSD_pt9_week24 |
primary CD4+ T cells |
Maraviroc |
01-009 |
week 24 |
HIV |
UCSD |
GSM1369551 | UCSD_pt10_week0 |
primary CD4+ T cells |
baseline |
01-010 |
week 0 |
HIV |
UCSD |
GSM1369552 | UCSD_pt10_week4 |
primary CD4+ T cells |
Maraviroc |
01-010 |
week 4 |
HIV |
UCSD |
GSM1369553 | UCSD_pt10_week24 |
primary CD4+ T cells |
Maraviroc |
01-010 |
week 24 |
HIV |
UCSD |
GSM1369554 | UCSD_pt11_week0 |
primary CD4+ T cells |
baseline |
01-011 |
week 0 |
HIV |
UCSD |
GSM1369555 | UCSD_pt11_week4 |
primary CD4+ T cells |
Maraviroc |
01-011 |
week 4 |
HIV |
UCSD |
GSM1369556 | UCSD_pt11_week24 |
primary CD4+ T cells |
Maraviroc |
01-011 |
week 24 |
HIV |
UCSD |
GSM1369557 | UCLA_pt2_week0 |
primary CD4+ T cells |
baseline |
21-802 |
week 0 |
HIV |
UCLA |
GSM1369558 | UCLA_pt2_week4 |
primary CD4+ T cells |
Maraviroc |
21-802 |
week 4 |
HIV |
UCLA |
GSM1369559 | UCLA_pt2_week24 |
primary CD4+ T cells |
Maraviroc |
21-802 |
week 24 |
HIV |
UCLA |
GSM1369560 | UCLA_pt3_week0 |
primary CD4+ T cells |
baseline |
21-803 |
week 0 |
HIV |
UCLA |
GSM1369561 | UCLA_pt3_week4 |
primary CD4+ T cells |
Maraviroc |
21-803 |
week 4 |
HIV |
UCLA |
GSM1369562 | UCLA_pt3_week24 |
primary CD4+ T cells |
Maraviroc |
21-803 |
week 24 |
HIV |
UCLA |
GSM1369563 | UCLA_pt4_week0 |
primary CD4+ T cells |
baseline |
21-804 |
week 0 |
HIV |
UCLA |
GSM1369564 | UCLA_pt4_week4 |
primary CD4+ T cells |
Maraviroc |
21-804 |
week 4 |
HIV |
UCLA |
GSM1369565 | UCLA_pt4_week24 |
primary CD4+ T cells |
Maraviroc |
21-804 |
week 24 |
HIV |
UCLA |
GSM1369566 | UCLA_pt5_week0 |
primary CD4+ T cells |
baseline |
21-805 |
week 0 |
HIV |
UCLA |
GSM1369567 | UCLA_pt5_week4 |
primary CD4+ T cells |
Maraviroc |
21-805 |
week 4 |
HIV |
UCLA |
GSM1369568 | UCLA_pt5_week24 |
primary CD4+ T cells |
Maraviroc |
21-805 |
week 24 |
HIV |
UCLA |
GSM1369569 | UCLA_pt6_week0 |
primary CD4+ T cells |
baseline |
21-806 |
week 0 |
HIV |
UCLA |
GSM1369570 | UCLA_pt6_week4 |
primary CD4+ T cells |
Maraviroc |
21-806 |
week 4 |
HIV |
UCLA |
GSM1369571 | UCLA_pt6_week24 |
primary CD4+ T cells |
Maraviroc |
21-806 |
week 24 |
HIV |
UCLA |
GSM1369572 | UCLA_pt8_week0 |
primary CD4+ T cells |
baseline |
21-808 |
week 0 |
HIV |
UCLA |
GSM1369573 | UCLA_pt8_week4 |
primary CD4+ T cells |
Maraviroc |
21-808 |
week 4 |
HIV |
UCLA |
GSM1369574 | UCLA_pt8_week24 |
primary CD4+ T cells |
Maraviroc |
21-808 |
week 24 |
HIV |
UCLA |
GSM1369575 | UCLA_pt9_week0 |
primary CD4+ T cells |
baseline |
21-809 |
week 0 |
HIV |
UCLA |
GSM1369576 | UCLA_pt9_week4 |
primary CD4+ T cells |
Maraviroc |
21-809 |
week 4 |
HIV |
UCLA |
GSM1369577 | UCLA_pt9_week24 |
primary CD4+ T cells |
Maraviroc |
21-809 |
week 24 |
HIV |
UCLA |
GSM1369578 | UCLA_pt10_week0 |
primary CD4+ T cells |
baseline |
21-810 |
week 0 |
HIV |
UCLA |
GSM1369579 | UCLA_pt10_week4 |
primary CD4+ T cells |
Maraviroc |
21-810 |
week 4 |
HIV |
UCLA |
GSM1369580 | UCLA_pt10_week24 |
primary CD4+ T cells |
Maraviroc |
21-810 |
week 24 |
HIV |
UCLA |
GSM1369581 | UCLA_pt12_week0 |
primary CD4+ T cells |
baseline |
21-812 |
week 0 |
HIV |
UCLA |
GSM1369582 | UCLA_pt12_week4 |
primary CD4+ T cells |
Maraviroc |
21-812 |
week 4 |
HIV |
UCLA |
GSM1369583 | UCLA_pt12_week24 |
primary CD4+ T cells |
Maraviroc |
21-812 |
week 24 |
HIV |
UCLA |
GSM1369584 | UCLA_pt13_week0 |
primary CD4+ T cells |
baseline |
21-813 |
week 0 |
HIV |
UCLA |
GSM1369585 | UCLA_pt13_week4 |
primary CD4+ T cells |
Maraviroc |
21-813 |
week 4 |
HIV |
UCLA |
GSM1369586 | UCLA_pt13_week24 |
primary CD4+ T cells |
Maraviroc |
21-813 |
week 24 |
HIV |
UCLA |
GSM1369587 | UCLA_pt15_week0 |
primary CD4+ T cells |
baseline |
21-815 |
week 0 |
HIV |
UCLA |
GSM1369588 | UCLA_pt15-week4 |
primary CD4+ T cells |
Maraviroc |
21-815 |
week 4 |
HIV |
UCLA |
GSM1369589 | UCLA_pt15_week24 |
primary CD4+ T cells |
Maraviroc |
21-815 |
week 24 |
HIV |
UCLA |
GSM1369590 | USC_pt1_week0 |
primary CD4+ T cells |
baseline |
03-401 |
week 0 |
HIV |
USC |
GSM1369591 | USC_pt1_week4 |
primary CD4+ T cells |
Maraviroc |
03-401 |
week 4 |
HIV |
USC |
GSM1369592 | USC_pt1_week24 |
primary CD4+ T cells |
Maraviroc |
03-401 |
week 24 |
HIV |
USC |
GSM1369593 | USC_pt3_week0 |
primary CD4+ T cells |
baseline |
03-403 |
week 0 |
HIV |
USC |
GSM1369594 | USC_pt3_week4 |
primary CD4+ T cells |
Maraviroc |
03-403 |
week 4 |
HIV |
USC |
GSM1369595 | USC_pt3_week24 |
primary CD4+ T cells |
Maraviroc |
03-403 |
week 24 |
HIV |
USC |
GSM1369596 | USC_pt4_week0 |
primary CD4+ T cells |
baseline |
03-404 |
week 0 |
HIV |
USC |
GSM1369597 | USC_pt4_week4 |
primary CD4+ T cells |
Maraviroc |
03-404 |
week 4 |
HIV |
USC |
GSM1369598 | USC_pt4_week24 |
primary CD4+ T cells |
Maraviroc |
03-404 |
week 24 |
HIV |
USC |
GSM1369599 | USC_pt5_week0 |
primary CD4+ T cells |
baseline |
03-405 |
week 0 |
HIV |
USC |
GSM1369600 | USC_pt5_week4 |
primary CD4+ T cells |
Maraviroc |
03-405 |
week 4 |
HIV |
USC |
GSM1369601 | USC_pt5_week24 |
primary CD4+ T cells |
Maraviroc |
03-405 |
week 24 |
HIV |
USC |
GSM1369602 | USC_pt7_week0 |
primary CD4+ T cells |
baseline |
03-407 |
week 0 |
HIV |
USC |
GSM1369603 | USC_pt7_week4 |
primary CD4+ T cells |
Maraviroc |
03-407 |
week 4 |
HIV |
USC |
GSM1369604 | USC_pt7_week24 |
primary CD4+ T cells |
Maraviroc |
03-407 |
week 24 |
HIV |
USC |
GSM1369605 | USC_pt8_week0 |
primary CD4+ T cells |
baseline |
03-408 |
week 0 |
HIV |
USC |
GSM1369606 | USC_pt8_week4 |
primary CD4+ T cells |
Maraviroc |
03-408 |
week 4 |
HIV |
USC |
GSM1369607 | USC_pt8_week24 |
primary CD4+ T cells |
Maraviroc |
03-408 |
week 24 |
HIV |
USC |
GSM1369608 | USC_pt9_week0 |
primary CD4+ T cells |
baseline |
03-409 |
week 0 |
HIV |
USC |
GSM1369609 | USC_pt9_week4 |
primary CD4+ T cells |
Maraviroc |
03-409 |
week 4 |
HIV |
USC |
GSM1369610 | USC_pt9_week24 |
primary CD4+ T cells |
Maraviroc |
03-409 |
week 24 |
HIV |
USC |
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