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Clinical

Longitudinal comparison of monocytes from an HIV viremic vs avirmeic state - GSE5220

Purpose

Longitudinal analysis of monocyte gene expressions patterns before and after cessation of HAART: understanding the impact of HIV viremia on the monocyte tranascritome. We used microarrays to detail the global program of gene expression underlying defects in monocytes from HIV infected patients during viremia..

Diminished Production of Monocyte Proinflammatory Cytokines During HIV Viremia is Mediated by Interferon-alpha: The in vivo effect of high-level HIV replication on the function of monocytes was investigated. HIV-positive patients had elevated spontaneous production of monocyte proinflammatory cytokines (IL-1?, IL-6, and TNF-?) compared to uninfected controls. These levels were highest in patients on-therapy and was diminished, in the context of viremia, following an interruption of therapy. Diminished production of proinflammatory cytokines during viremia was restored by culturing with autologous CD4+ T cells or monocytes from an on-therapy time point, or by the addition of lipopolysaccharide (LPS). Microarray analysis demonstrated that diminished monocyte production of proinflammatory cytokines was correlated with elevated levels of type I interferon-stimulated gene transcripts. Addition of exogenous IFN-?2A suppressed the spontaneous production of IL-1?, IL-6, and TNF-? but did not affect responses to LPS, recapitulating the changes observed in HIV viremic patients. These results suggest that high-level HIV viremia inhibits monocyte function through chronic stimulation by IFN-?. This effect of viremia on monocytes may play a role in diminished adaptive immune system functions in HIV-infected patients. Restoration of these functions may contribute to the partial immune reconstitution observed following therapy and may be involved in immune reconstitution and inflammatory syndrome seen in some patients.

Hypothesis

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Experimental Design

A longitudinal study was performed on 8 HIV infected individuals looking at gene expression changes in monocytes as a result of rebound of HIV viral load following termination of HAART: 8 patients pre and post HAART cessation.

Experimental Variables

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Controls

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Methods

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Additional Information

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Microarray
Affymetrix HG-U133A
16 Samples Loaded: 16
Human (Homo sapiens)
Monocytes
HIV
Sample Set Spreadsheet
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Samples Preview
Sample ID !Sample_title group
GSM118290 aviremic HIV patient A aviremic
GSM118291 aviremic HIV patient B aviremic
GSM118292 aviremic HIV patient C aviremic
GSM118293 aviremic HIV patient D aviremic
GSM118294 aviremic HIV patient E aviremic
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File
sampleset4000019_sampleannotations.csv
Sample Set Spreadsheet
Raw Signal
Raw Signal
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Sample ID !Sample Title Group
GSM118290
aviremic HIV patient A
aviremic
GSM118291
aviremic HIV patient B
aviremic
GSM118292
aviremic HIV patient C
aviremic
GSM118293
aviremic HIV patient D
aviremic
GSM118294
aviremic HIV patient E
aviremic
GSM118295
aviremic HIV patient F
aviremic
GSM118296
aviremic HIV patient G
aviremic
GSM118297
aviremic HIV patient H
aviremic
GSM118298
viremic HIV patient A
viremic
GSM118299
viremic HIV patient B
viremic
GSM118300
viremic HIV patient C
viremic
GSM118301
viremic HIV patient D
viremic
GSM118302
viremic HIV patient E
viremic
GSM118303
viremic HIV patient F
viremic
GSM118304
viremic HIV patient G
viremic
GSM118305
viremic HIV patient H
viremic

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