Sample Set Annotation Tool: Inflammation and macrophage activation in adipose tissue of HIV-infected patients under antiretroviral treatment

Study Design
Assay
Sample Info
Files
Info
Samples
Group Sets
Analysis

Purpose

We used microarrays to detail the global gene expression profile in subcutaneous adipose tissue between controls and HIV-infected patients under antiretroviral treatment.

Hypothesis

Experimental Design

Subcutaneous adipose tissue biopsy from 7 HIV-infected patients and 6 control subjects were taken for RNA extraction and hybridization on Affymetrix microarrays.

Experimental Variables

Controls

Methods

Additional Information

Expected Samples:

13 Samples Loaded: 13

Species

Human (Homo sapiens)

Sample Source

Adipose tissue

Disease

HIV

Treatment Protocol

Growth Protocol

Extraction Protocol

Storage Conditions

Sample Set Spreadsheet

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Samples Preview

Sample ID	!Sample_title	tissue
GSM494796	HIV-infected patient 1, biological replicate 1	Subcutaneous Abdominal Adipose tissue
GSM494797	HIV-infected patient 3, biological replicate 2	Subcutaneous Abdominal Adipose tissue
GSM494798	HIV-infected patient 4, biological replicate 3	Subcutaneous Abdominal Adipose tissue
GSM494799	HIV-infected patient H2, biological replicate 4	Subcutaneous Abdominal Adipose tissue
GSM494800	HIV-infected patient I1, biological replicate 5	Subcutaneous Abdominal Adipose tissue

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File

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Sample ID	!Sample Title	Tissue
GSM494796	HIV-infected patient 1, biological replicate 1	Subcutaneous Abdominal Adipose tissue
GSM494797	HIV-infected patient 3, biological replicate 2	Subcutaneous Abdominal Adipose tissue
GSM494798	HIV-infected patient 4, biological replicate 3	Subcutaneous Abdominal Adipose tissue
GSM494799	HIV-infected patient H2, biological replicate 4	Subcutaneous Abdominal Adipose tissue
GSM494800	HIV-infected patient I1, biological replicate 5	Subcutaneous Abdominal Adipose tissue
GSM494801	HIV-infected patient J2, biological replicate 6	Subcutaneous Abdominal Adipose tissue
GSM494802	HIV-infected patient K2, biological replicate 7	Subcutaneous Abdominal Adipose tissue
GSM494803	control subject A2, biological replicate 1	Subcutaneous Abdominal Adipose tissue
GSM494804	control subject B2, biological replicate 2	Subcutaneous Abdominal Adipose tissue
GSM494805	control subject C1_2, biological replicate 3	Subcutaneous Abdominal Adipose tissue
GSM494806	control subject C1, biological replicate 4	Subcutaneous Abdominal Adipose tissue
GSM494807	control subject C2, biological replicate 5	Subcutaneous Abdominal Adipose tissue
GSM494808	control subject D1, biological replicate 6	Subcutaneous Abdominal Adipose tissue

Group Sets View in Gene Expression Browser

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Module Analysis

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SIDRA