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In Progress
Clinical

HIV-1 infection in human PBMCs in vivo - GSE2171

Purpose

We used Affymetix HG Focus GeneChip to measure the expression levels of HIV seronegative and seropositive individuals in human PBMCs in vivo. GSM39104 -GSM39115 are HIV seronegative samples; GSM39116-GSM39137 are HIV seropositive but drug naive samples; GSM39138-GSM39147 are HIV seropositive samples used to test serostatus biomarker; GSM39148-GSM39170 are HIV seropositive individuals whose CD4 cells decrease over time; GSM39171-GSM39187 are HIV seropositive individuals whose CD4 cells increase over time; GSM39188-GSM39190 are HIV seropositive samples used to test CD4 cell increase/decrease over time.

Hypothesis

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Experimental Design

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Experimental Variables

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Controls

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Methods

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Additional Information

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Microarray
Affymetrix Affymetrix Human HG-Focus v1
87 Samples Loaded: 87
Human (Homo sapiens)
PBMC
HIV
Sample Set Spreadsheet
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Samples Preview
Sample ID !Sample_title HIV status
GSM39104 SeroNeg-1 SeroNeg
GSM39105 SeroNeg-2 SeroNeg
GSM39106 SeroNeg-3 SeroNeg
GSM39107 SeroNeg-4 SeroNeg
GSM39108 SeroNeg-5 SeroNeg
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File
sampleset4000036_sampleannotations.csv
Sample Set Spreadsheet
Raw Signal
Raw Signal
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Clinical Datasource
Links

Samples Viewer / Editor

All fields are editable except the "Sample ID" column. To edit a cell, click within the cell. To edit a "date" cell, click on the calendar icon. To cancel an edit, press the ESC key.

Sample ID !Sample Title HIV status
GSM39104
SeroNeg-1
SeroNeg
GSM39105
SeroNeg-2
SeroNeg
GSM39106
SeroNeg-3
SeroNeg
GSM39107
SeroNeg-4
SeroNeg
GSM39108
SeroNeg-5
SeroNeg
GSM39109
SeroNeg-6
SeroNeg
GSM39110
SeroNeg-7
SeroNeg
GSM39111
SeroNeg-8
SeroNeg
GSM39112
SeroNeg-9
SeroNeg
GSM39113
SeroNeg-10
SeroNeg
GSM39114
SeroNeg-11
SeroNeg
GSM39115
SeroNeg-12
SeroNeg
GSM39116
DNGL-1
SeroPos_drug naive
GSM39117
DNGL-2
SeroPos_drug naive
GSM39118
DNGL-3
SeroPos_drug naive
GSM39119
DNGL-4
SeroPos_drug naive
GSM39120
DNGM-1
SeroPos_drug naive
GSM39121
DNGM-2
SeroPos_drug naive
GSM39122
DNGM-3
SeroPos_drug naive
GSM39123
DNGM-4
SeroPos_drug naive
GSM39124
DNGM-5
SeroPos_drug naive
GSM39125
DNGM-6
SeroPos_drug naive
GSM39126
DNGM-7
SeroPos_drug naive
GSM39127
DNGM-8
SeroPos_drug naive
GSM39128
DNGM-9
SeroPos_drug naive
GSM39129
DNGM-10
SeroPos_drug naive
GSM39130
DNGM-11
SeroPos_drug naive
GSM39131
DNGM-12
SeroPos_drug naive
GSM39132
DNGM-13
SeroPos_drug naive
GSM39133
DNGM-14
SeroPos_drug naive
GSM39134
DNGH-1
SeroPos_drug naive
GSM39135
DNGH-2
SeroPos_drug naive
GSM39136
DNGH-3
SeroPos_drug naive
GSM39137
DNGH-4
SeroPos_drug naive
GSM39138
SeroTest-1
SeroPos_Test
GSM39139
SeroTest-2
SeroPos_Test
GSM39140
SeroTest-3
SeroPos_Test
GSM39141
SeroTest-4
SeroPos_Test
GSM39142
SeroTest-5
SeroPos_Test
GSM39143
SeroTest-6
SeroPos_Test
GSM39144
SeroTest-7
SeroPos_Test
GSM39145
SeroTest-8
SeroPos_Test
GSM39146
SeroTest-9
SeroPos_Test
GSM39147
SeroTest-10
SeroPos_Test
GSM39148
CD4DecTp1-1
SeroPos_CD4dec
GSM39149
CD4DecTp1-2
SeroPos_CD4dec
GSM39150
CD4DecTp1-3
SeroPos_CD4dec
GSM39151
CD4DecTp1-4
SeroPos_CD4dec
GSM39152
CD4DecTp1-5
SeroPos_CD4dec
GSM39153
CD4DecTp1-6
SeroPos_CD4dec
GSM39154
CD4DecTp1-7
SeroPos_CD4dec
GSM39155
CD4DecTp1-8
SeroPos_CD4dec
GSM39156
CD4DecTp1-9
SeroPos_CD4dec
GSM39157
CD4DecTp1-10
SeroPos_CD4dec
GSM39158
CD4DecTp2-1
SeroPos_CD4dec
GSM39159
CD4DecTp2-2
SeroPos_CD4dec
GSM39160
CD4DecTp2-3
SeroPos_CD4dec
GSM39161
CD4DecTp2-4
SeroPos_CD4dec
GSM39162
CD4DecTp2-5
SeroPos_CD4dec
GSM39163
CD4DecTp2-6
SeroPos_CD4dec
GSM39164
CD4DecTp2-7
SeroPos_CD4dec
GSM39165
CD4DecTp2-8
SeroPos_CD4dec
GSM39166
CD4DecTp2-9
SeroPos_CD4dec
GSM39167
CD4DecTp2-10
SeroPos_CD4dec
GSM39168
CD4DecTp2-11
SeroPos_CD4dec
GSM39169
CD4DecTp2-12
SeroPos_CD4dec
GSM39170
CD4DecTp2-13
SeroPos_CD4dec
GSM39171
CD4IncTp1-1
SeroPos_CD4inc
GSM39172
CD4IncTp1-2
SeroPos_CD4inc
GSM39173
CD4IncTp1-3
SeroPos_CD4inc
GSM39174
CD4IncTp1-4
SeroPos_CD4inc
GSM39175
CD4IncTp1-5
SeroPos_CD4inc
GSM39176
CD4IncTp1-6
SeroPos_CD4inc
GSM39177
CD4IncTp1-7
SeroPos_CD4inc
GSM39178
CD4IncTp1-8
SeroPos_CD4inc
GSM39179
CD4IncTp1-9
SeroPos_CD4inc
GSM39180
CD4IncTp2-1
SeroPos_CD4inc
GSM39181
CD4IncTp2-2
SeroPos_CD4inc
GSM39182
CD4IncTp2-3
SeroPos_CD4inc
GSM39183
CD4IncTp2-4
SeroPos_CD4inc
GSM39184
CD4IncTp2-5
SeroPos_CD4inc
GSM39185
CD4IncTp2-6
SeroPos_CD4inc
GSM39186
CD4IncTp2-7
SeroPos_CD4inc
GSM39187
CD4IncTp2-8
SeroPos_CD4inc
GSM39188
CD4IncDec-test-1
SeroPos_CD4test
GSM39189
CD4IncDec-test-2
SeroPos_CD4test
GSM39190
CD4IncDec-test-3
SeroPos_CD4test

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